Detection of Furcraea Necrotic Streak Virus (FNSV) in fique seed (Furcraea macrophylla Baker) to prevent the spread of the macana disease
DOI:
https://doi.org/10.21704/pja.v7i1.1957Keywords:
Macana, iral diagnosis, RT-PCR, DBIA, fique, FNSV, natural fiber, validationAbstract
The fique crop has great potential for the development of the natural fiber market as a beneficial alternative for the protection of the environment. In Colombia, one of the main limitations of fiber production in fique plants is the viral disease Macana caused by Furcraea Necrotic Streak Virus (FNSV). This work aimed to validate the detection of FNSV in asexual planting material from one of the main producing areas and thus contribute to preventing the spread of the disease in the country. The analysis of plants from different geographic altitudes in Cauca, Colombia, showed a positive correlation with the prevalence of Macana disease (being more significant at higher altitudes) but not with the severity of the symptoms. The detection of FNSV on seeds by dot blot immunobinding assay (DBIA) using a polyclonal antibody IgY showed sensitivity (79 %) and specificity (80 %) when sprouts were analyzed, at the same time, for bulbils, the sensitivity was higher (100 %). Moreover, when sprouts were analyzed by the RT-PCR based on FNSV movement protein and polymerase-associated proteins, the sensitivity and specificity were 94 % and 50 %, respectively, in contrast, in the case of bulbils, the specificity was higher (100 %). Additionally, the results showed no uniformity in the distribution of the viral particles on vegetal tissue of infected plants, which is necessary to use the largest amount of tissue possible to perform the detection. As part of the optimization of the techniques, it was shown that plant tissue samples could be collected, transported, and stored on filter paper, allowing the detection of the virus 60 days after collection.
Downloads
References
Abd El-Aziz, M. (2019). Three modern serological methods to detect plant viruses. Journal of Plant Science and Phytopatholog, 3, 101–106. https://doi.org/10.29328/journal.jpsp.1001039
Adams, M. J., King, A. M. Q., & Carstens, E. B. (2013). Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Archives of Virology, 158(9), 2023–2030. https://doi.org/10.1007/S00705-013-1688-5
Aguilar, E., Allende, L., Del Toro, F. J., Chung, B. N., Canto, T., & Tenllado, F. (2015). Effects of elevated CO2 and temperature on pathogenicity determinants and virulence of potato virus X/Potyvirus-Associated synergism. Molecular Plant-Microbe Interactions, 28(12), 1364-1373. https://doi.org/10.1094/MPMI-08-15-0178-R
Barrera, G., & Belaich, M. (2015). Descripción morfológica y molecular de un aislamiento colombiano del virus de la raya necrótica del fique. XI Congreso Argentino de Virología.
Barrera, G., Cuartas, P., & Villamizar, L. (2015). Desarrollo de anticuerpos policlonales para la detección del virus de La Macana del fique. Biomédica ,35(1), 50–78
Boonham, N., Kreuze, J., Winter, S., van der Vlugt, R., Bergervoet, J., Tomlinson, J., & Mumford, R. (2014). Methods in virus diagnostics: From ELISA to next generation sequencing. Virus Research, 186, 20–31. https://doi.org/10.1016/J.VIRUSRES.2013.12.007
Brown, L. D., Cai, T. T., & DasGupta K. (2001) Interval estimation for a binomial proportion. Statist Sci, 16(2), 101–133. https://doi.org/10.1214/ss/1009213286
Burgoyne, L. A. (1993). Solid medium and method for DNA storage (U. S. Patent No. US5496562A).
Cadena de Producción del Fique (2006). Guía ambiental del subsector fiquero. Ministerio de Agricultura y Desarrollo Rural.
Cardona-Ospina, J. A., Villalba-Miranda, M. F., Palechor-Ocampo, L. A., Mancilla, L. I., & Sepúlveda-Arias, J. C. (2019). A systematic review of FTA cards® as a tool for viral RNA preservation in fieldwork: Are they safe and effective?. Preventive Veterinary Medicine, 172, 104772. https://doi.org/10.1016/j.prevetmed.2019.104772
Cardwell, K., Dennis, G., Flannery, A. R., Fletcher, J., Luster, D., Nakhla, M., Rice, A., Shiel, P., Stack, J., Walsh, C., & Levy, L. (2018). Principles of diagnostic assay validation for plant pathogens: A basic review of concepts. Plant Health Progress, 19(4), 272–278. https://apsjournals.apsnet.org/doi/full/10.1094/PHP-06-18-0036-RV
Data Bridge Market Research (2020). Global Natural Fibers Market – Industry Trends and Forecast to 2029. https://www.databridgemarketresearch.com/reports/global-natural-fibers-market
Echeverri, R. D., Franco, L. M., & González, M. R. (2015). Fique en Colombia. Fondo Editorial ITM. https://repositorio.itm.edu.co/bitstream/handle/20.500.12622/2013/Fique-en%20Colombia.pdf?sequence=1&isAllowed=y
Flórez, R., Beltrán Acosta, C., & Toro, S. I. (2013). Análisis económico e impacto del virus de la macana en el cultivo de fique. In A.Smith, C. Beltrán-Acosta, & A. Cotes (eds,). Avances en el estudio del virus de la macana en el cultivo de fique (Furcraea spp.): compilación de artículos técnicos (pp. 21–29). Corpoica. https://repository.agrosavia.co/handle/20.500.12324/19556
Gómez González, C., Pérez Castán, J. F., & Martin, J. L. R. (2007). Capítulo 8: Pruebas diagnósticas. Concordancia. SEMERGEN - Medicina de Familia, 33(10), 509–519. https://doi.org/10.1016/S1138-3593(07)73955-2
Hsu, Ht. (2009). Development of Enzyme Linked, Tissue Blot and Dot Blot Immunoassays for Plant Virus Detection. In Burns, R. (eds) Plant Pathology. Methods in Molecular Biology,508, pp. 15–25). https://doi.org/10.1007/978-1-59745-062-1_2
Hull, R. (2014). Plant Virology. Academic Press, London.
Jacobson, R. (1998). Validation of serological assays for diagnosis of infectious diseases. Revue Scientifique et Technique, 17(2), 469–526. https://doi.org/10.20506/rst.17.2.1119
Jeong, J. J., Ju, H.J., & Noh, J. (2014). A Review of Detection Methods for the Plant Viruses. Research in Plant Disease, 20(3), 173–181. https://doi.org/10.5423/RPD.2014.20.3.173
Kappagantu, M., Collum, T. D., Dardick, C. & Culver, J. N. (2020). Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection. Annual Review of Virology, 7(1), 351-370. https://doi.org/10.1146/annurev-virology-010320-072410
Kozłowski, R. M., Mackiewicz-Talarczyk, M., & Barriga-Bedoya, J. (2020). 20-New emerging natural fibres and relevant sources of information. In R. M. Kozłowski & M. Mackiewicz-Talarczyk (eds.), Handbook of Natural Fibres (pp.747–787). Woodhead Publishing. https://doi.org/10.1016/B978-0-12-818398-4.00022-0
Kubota, K., & Ng, J. C. K. (2016). Lettuce chlorosis virus P23 Suppresses RNA Silencing and Induces Local Necrosis with Increased Severity at Raised Temperatures. Phytopathology, 106(6), 653–662. https://doi.org/10.1094/phyto-09-15-0219-r
Lacroix, C., Renner, K., Cole, E., Seabloom, E. W., Borer, E. T., & Malmstrom, C. M. (2016). Methodological Guidelines for Accurate Detection of Viruses in Wild Plant Species. Applied and Environmental Microbiology, 106(6), 653–662. https://doi.org/10.1128/AEM.03538-15
Landis, J. R. & Koch, G. G. (1977). The measurement of observer agreement for categorical data. Biometrics, 33(1), 159–174.
Ministerio de Agricultura y Desarrollo Rural (2021). Cadena Agroindustrial del Fique [PowerPoint slides]. https://sioc.minagricultura.gov.co/Fique/Documentos/2021-03-31%20Cifras%20Sectoriales.pdf
Morales, F., Castaño, M., Calvert, L., & Arroyave, J. A. (1992). Furcraea Necrotic Streak Virus: An Apparent New Member of the Dianthovirus Group. Journal of Phytopathology, 134(3), 247–254. https://doi.org/10.1111/j.1439-0434.1992.tb01233.x
Ortiz-González, D., Paredes-Martínez, O. E., & García-Parra, M. A. (2021). Rehabilitación del cultivo de fique (Furcraea macrophylla) mediante poda “descope” en Cauca, Colombia. Centro Agrícola, 48(1), 5–13. http://scielo.sld.cu/scielo.php?script=sci_arttext&pid=S0253-57852021000100005&lng=es&tlng=
Pallás, J. A. M., & Villa, J. J. (2019). Sensibilidad y Especificidad. In J. M. Argimon Pallàs & J. J. Villa (eds.), Métodos de investigación clínica y epidemiológica (pp. 339–344). Elsevier.
Rodriguez, N. (2012). Enfermedades en especies de importancia económica en Colombia transmitidas por hongos vectores de partículas virales. [Bachelor Thesis, Pontificia Universidad Javeriana]. Repositorio Institucional de la Pontificia Universidad Javeriana https://repository.javeriana.edu.co/bitstream/handle/10554/11769/RodriguezPaipillaNathalie2012.pdf?sequence=1
Rubio, L., Galipienso, L., & Ferriol, I. (2020). Detection of Plant Viruses and Disease Management: Relevance of Genetic Diversity and Evolution. Frontiers in Plant Science, 11. https://doi.org/10.3389/fpls.2020.01092
Safaripour, M., Hossain, K. G., Ulven, C. A., & Pourhashem, G. (2021). Environmental impact tradeoff considerations for wheat bran-based biocomposite. Science of The Total Environment, 781, 146588. https://doi.org/10.1016/j.scitotenv.2021.146588
Sarwar, M., Shad, N. A., & Batool, R. (2020). Integrated management of vectored viral diseases of plants. In L. P. Awasthi (eds.), Applied Plant Virology, (pp. 707–724). Academic Press. https://doi.org/10.1016/B978-0-12-818654-1.00050-5
Seida, A. A. (2017). Monoclonal antibodies and Polyclonal antibodies: A Brief Comparison. Adv Tech Clin Microbiol, 1(2).
Singh, K. P., Jahagirdar, S. & Sarma, B. K. (2021). Emerging Trends in Plant Pathology. Springer.
Thorne, L., & McElhinney, L. (2017). Protocol for virus FTA card production and FTA cards assays protocols. file:///C:/Users/OscarDGI/Downloads/Attachment_0.pdf
Toloza-Moreno, D., Villamizar-Rivero, L., Cuartas-Otalora, P., & Barrera-Cubillos, G. (2022). Immunodetection of Furcraea Necrotic Streak Virus-FNSV in fique plants (Furcraea macrophylla Baker) using a polyclonal antibody IgY produced in chicken egg yolk. Journal of Immunological Methods, 503, 113232. https://doi.org/10.1016/j.jim.2022.113232
van der Want, J. P. H., & Dijkstra, J. (2006). A history of plant virology. Archives of Virology 151(8), 1467–1498. https://doi.org/10.1007/s00705-006-0782-3
van der Vlught, R. A. A., Verbeek, M., and Bonants, P. J. M. (2007). Explanatory document for the validation of detection methods for plant pests. Plant Research International (B.V. Report 135EN). https://library.wur.nl/WebQuery/wurpubs/fulltext/301443
Downloads
Published
Issue
Section
License
Copyright (c) 2023 Maira Gamero, Daniel Ortiz, Gloria Barrera
This work is licensed under a Creative Commons Attribution 4.0 International License.